DNAHelix.org - new forum threads http://dnahelix.wikidot.com/forum/start Threads in forums of the site "DNAHelix.org" - Warren Cheung's personal wiki Mon, 16 Mar 2026 23:18:27 +0000 http://dnahelix.wikidot.com/forum/t-5536 Agenda http://dnahelix.wikidot.com/forum/t-5536/agenda Bi-Weekly Meeting Agendas Tue, 06 Mar 2007 07:01:25 +0000 wac 1732
  • Fourth Committee Member
  • Disease Terminologies
  • Data storage and Computation Resources
  • Timeline
    • ]]>     http://dnahelix.wikidot.com/forum/t-5535 Updates http://dnahelix.wikidot.com/forum/t-5535/updates Tue, 06 Mar 2007 06:45:58 +0000 wac 1732 Current Updates placed in Research Results

    • Disease Terminologies: MeSH, ICD, SNOMED CT
    • EUtils query examples to download needed data from NCBI
    • Basic Data Model Diagram
    ]]>     http://dnahelix.wikidot.com/forum/t-4835 Meetings http://dnahelix.wikidot.com/forum/t-4835/meetings Bi-weekly supervisor meetings Tue, 20 Feb 2007 23:06:24 +0000 wac 1732 Mon Feb 19 2007 Meeting:

    Disease source

    • Question: What is a disease
    • Hold OMIM out as a verification source
    • look for resource describing diseases
      • if general reference not available, try specific disease reference
      • compare to commercial tools
      • discuss with semantic web people - Ben Good, Mark Wilkinson
    • Check on Simon Twigger (U. Wisc.)
    • Neuronames
      • find out how widely used
    • implementation: NCBI E-Utils

    To-Do Items

    1. transcription factor genes from Entrez Gene
    2. Neuroname brain disease publications from PubMed
    3. MeSH brain disease publications from PubMed
    4. GeneRIF (gene,pubmedID)
    5. Link Disease to PubMed (find resource?)
    6. Link TF Genes to Disease via PubMed
    • Reading: Robbins Pathology textbook
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