Computational Resources

Servers

sonoma.cmmt.ubc.ca

Databases hosted

pubmed

Pubmed 2008 Baseline load

  • Table pubmed: holds pubmed IDs to titles relation
  • Table pubmed_mesh: holds pubmed ID to mesh term relation
  • Table pubmed_chem: holds pubmed ID to chemical term relation

warrendb

PubMed Disease Articles (Fall 2007)

  • Table pubmed: holds pubmed IDs to titles relation
  • Table pubmed_mesh: holds pubmed ID to mesh term relation

MeSH 2007

  • Table mesh: mesh term, tree number
  • Table mesh_child: mesh term, mesh term that is itself or lower in the hierarchy

UMLS 2007AB

  • Table umls: UMLS concept ID, ID in the original datasource, Name of the original datasource, type of ID, associated text
  • Table umls_coc: concept ID1, ID2, Source of co-occurrence, type of co-occurrence, number of co-occurrences
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